- Shuaijian Dai#, Shichang Liu#, Chen Zhou#, Fengchao Yu, Guang Zhu, Wenhao Zhang, Haiteng Deng, Al Burlingame, Weichuan Yu, Tingliang Wang, Ning Li.Capturing the hierarchically assorted modules of protein-protein interactions in the organized nucleome[Article].Molecular Plant, 2023, 16 (5) : 930-961.
- Shengzhi Lai#, Shuaijian Dai#, Peize Zhao, Chen Zhou, Ning Li, Weichuan Yu.PIPI-C: A Combinatorial Optimization Framework for Identifying Post-translational Modification Hot-spots in Mass Spectrometry Data[Article].Molecular & Cellular Proteomics, 2025, 25 (2) : 101494.
- Chen Zhou#, Shuaijian Dai#, Yuanqiao Lin#, Sheng Lian, Xiaodan Fan, Ning Li, Weichuan Yu.Exhaustive Cross-Linking Search with Protein Feedback[Article].Journal of Proteome Research, 2022, 22 (1) : 101-113.
- Peize Zhao#, Shengzhi Lai#, Shuaijian Dai#, Chen Zhou, Ning Li, Weichuan Yu.Amino Acid Substitutomics: Profiling Amino Acid Substitutions at the Proteomic Scale Unveils Biological Implications and Escape Hypotheses in Cancer[Article].Journal of Proteome Research, 2026, 25 (10) : 5452-5468.
- Nan Yang#, Sunny Sing Pun#, Emily Oi Ying Wong#, Shuaijian Dai#, Xiaoting Li, Manhin Leung, Al Burlingame, Zhi-Yong Wang, Minglei Yang, Yinglin Lu, Yuxing An, Yage Zhang, Zhu Yang, Weichuan Yu, Ning Li.Deciphering the Protein Phosphorylation Dynamics Triggered by Seconds of Force Stimulation[Article].Molecular & Cellular Proteomics, 2026, 25 (4) : 101532.
- Yutong Wang, Qian Han, Yilong He, Shumin Deng, Ziwei Huang, Ziyan Zhang, Shuaijian Dai#, Zhuxin Dong#.Following the central dogma: Nanopore sequencing from DNA and RNA to proteins[Review].iScience, 2026, 29 (2) : 114835.
- Atieh Moradi#, Shuaijian Dai#, Emily Oi Ying Wong, Guang Zhu, Fengchao Yu, Hon-Ming Lam, Zhiyong Wang, Al Burlingame, Chengtao Lin, Alireza Afsharifar, Weichuan Yu, Tingliang Wang, Ning Li.Isotopically Dimethyl Labeling-Based Quantitative Proteomic Analysis of Phosphoproteomes of Soybean Cultivars[Article].Biomolecules, 2021, 11 (8) : 1218.
| |