Journal Publications

[21]Yi Pan., Fang-Xiang Wu, Min Li, Zhen Zhang, Xiaojun Ding, Jianxin Wang, Jiancheng Zhong.Protein Inference from the Integration of Tandem MS Data and Interactome Network. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 2017, 14(6): 1399-1409
[22]Jianxin Wang, Yi Pan, Fangxiang Wu, Wei Lan, Min Li, Jin Liu.Classification of Alzheimer’s Disease Using Whole Brain Hierarchical Network. IEEE/ACM Transactions on Computational Biology and Bioinformatics. http://dx.doi.org/10.1109/TCBB.2016.2635144
[23]Yi Pan, Fang-Xiang Wu, Jianxin Wang*, Xuehong Wu, Yu Tang, Min Li.C-DEVA: detection, evaluation, visualization and annotation of clusters from biological networks. Biosystems, 2016,150:78-86. DOI 10.1016/j.biosystems.2016.08.004
[24]Zhuohua Zhang, Fangxiang Wu, Jianxin Wang, Qi Li, Ruiqing Zheng, Min Li.Prioritizing Disease Genes by Using Search Engine Algorithm. Current Bioinformatics, 2016, 11(2): 195-202. DOI: 10.2174/1574893611666160125220905
[25]Yi Pan, Fang-Xiang Wu, Ping Zhong*, Xiaopei Chen, Zhibei Niu, Min Li.A reliable neighbor-based method for identifying essential proteins by integrating gene expressions, orthology, and subcellular localization information. TSINGHUA SCIENCE AND TECHNOLOGY, 2016, 12(6): 668-677
[26]Yi Pan, Fang-Xiang Wu, Jianxin Wang*, Min Li*, Gaoshi Li.Predicting essential proteins based on subcellular localization, orthology and PPI networks. BMC Bioinformatics. Vol 17 Suppl, 2016. DOI: 10.1186/s12859-016-1115-5
[27]Yi Pan, Jianxin Wang, Min Li, Sheng-You Huang.HybridDock: a hybrid protein-ligand docking protocol integrating protein- and ligand-based approaches. J. Chem. Inf. Model. DOI: 10.1021/acs.jcim.5b00275. 2015
[28]Yi Pan., Fang-Xiang Wu, Min Li, Zhen Zhang, Jianxin Wang, Junwei Luo.BOSS: a novel scaffolding algorithm based on optimized scaffold graph. Bioinformatics. DOI: 10.1093/bioinformatics/btw597
[29]Yi Pan, Fangxiang Wu, Jin Liu, Min Li, Jianxin Wang, Wei Lan.Predicting microRNA-disease associations based on improved microRNA and disease similarities". IEEE/ACM Transactions on Computational Biology and Bioinformatics. DOI:10.1109/TCBB.2016.2586190
[30]Yaohang Li, Jianxin Wang, Min Li, Lei Qian, Brandon Williams, Mais Nijim, Ashraf Yaseen.FLEXc: protein flexibility prediction using context-based statistics, predicted structural features, and sequence information. BMC Bioinformatics. Vol 17 Suppl, 2016. DOI: 10.1186/s12859-016-1117-3
[31]Yi Pan, Fangxiang Wu, Xiaoqing Peng, Junwei Luo, Min Li, Jianxin Wang, Huimin Luo.Drug repositioning based on comprehensive similarity measures and Bi-Random Walk algorithm. Bioinformatics. DOI: 10.1093/bioinformatics/btw228
[32]Yi Pan, Fang-Xiang Wu, Yaohang Li, Xueyong Li, Min Li*, Jianxin Wang*, Bihai Zhao.A new method for predicting protein functions from dynamic weighted interactome networks, IEEE Transactions on Nanobioscience. DOI: 10.1109/TNB.2016.2536161
[33]Yi Pan, Fang-Xiang Wu, Min Li, Zhen Zhang, Xiaojun Ding, Jianxin Wang, Jiancheng Zhong.Protein Inference from the Integration of Tandem MS Data and Interactome Network. IEEE/ACM Transactions on Computational Biology and Bioinformatics.DOI 10.1109/TCBB.2016.2601618
[34]Fang-Xiang Wu*, Jianxin Wang, Min Li, Xuequn Shang, Bolin Chen.Identifying individual-cancer-related genes by re-balancing the training samples. IEEE Transactions on Nanobioscience. DOI: 10.1109/TNB.2016.2553119
[35]Yi Pan, Fangxiang Wu, Yaohang Li, Jin Liu, Min Li, Jianxin Wang, Wei Lan.Predicting drug-target interaction using positive-unlabeled learning. Neurocomputing, 2016, DOI: 10.1016/j.neucom.2016.03.080
[36]Fang-Xiang Wu, Jianxin Wang, Min Li, Lin Wu.The minimum steering node set of complex networks and its applications to biomolecular networks. IET Systems Biology, 2016, 10(3):116-23. 2016 Jun
[37]Zuguo Yu, Min Li, Jianxin Wang.Nonlinear Science and Network Methods For Prediction Problems In Bioinformatics And Systems Biology. Current Bioinformatics. 2016, 11(2):154-155
[38]Fangxiang Wu, Zhibei Niu, Yu Lu, Min Li.United complex centrality for identification of essential proteins from PPI networks. IEEE/ACM Transactions on Computational Biology and Bioinformatics. DOI 10.1109/TCBB.2015.2394487
[39]Lusheng Wang, Lu Chen, Min Li*, Wei Peng.Predicting protein functions by using unbalanced random walk algorithm on three biological networks. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 10.1109/TCBB.2015.2394314
[40]Fang-Xiang Wu., Yi Pan, Jianxin Wang, Min Li*, Yu Tang.CytoNCA: a cytoscape plugin for centrality analysis and evaluation of biological networks. BioSystems, 2015, 127: 67-72. DOI: 10.1016/j.biosystems.2014.11.005

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