Journal Publications

• [1]Jianxin Wang*, Yi Pan, Fang-Xiang Wu, Jie Yang, Min Li*.DyNetViewer: a Cytoscape app for dynamic network construction, analysis and visualization. Bioinformatics. 2018. DOI: 10.1093/bioinformatics/btx821
• [2]Fang-Xiang Wu, Jianxin Wang, Min Li, Lin Wu.CytoCtrlAnalyser: a Cytoscape app for biomolecular network controllability analysis. Bioinformatics, 2017. doi.org/10.1093/bioinformatics/btx764
• [3]Jianxin Wang, Yaohang Li, Quan Liu, Shaokai Wang, Min Li, Huimin Luo.Computational Drug Repositioning using Low-Rank Matrix Approximation and Randomized Algorithms. Bioinformatics
• [4]Jianxin Wang*, Fang-Xiang Wu, Yaohang Li, Ruiqing Zheng, Min Li*.MGT-SM: A Method for Constructing Cellular Signal Transduction Networks. IEEE/ACM Transactions on Computational Biology and Bioinformatics. DOI: 10.1109/TCBB.2017.2705143
• [5]Yi Pan, Jianxin Wang, Xiaopei Chen, Peng Ni, Min Li*.Construction of refined protein interaction network for predicting essential proteins. IEEE/ACM Transactions on Computational Biology and Bioinformatics. DOI: 10.1109/TCBB.2017.2665482
• [6]Jianxin Wang*, Yi Pan, Fangxiang Wu, Wei Lan, Min Li, Jin Liu.Classification of Alzheimer’s Disease Using Whole Brain Hierarchical Network. IEEE/ACM Transactions on Computational Biology and Bioinformatics. http://dx.doi.org/10.1109/TCBB.2016.2635144
• [7]Yi Pan, Fangxiang Wu, Jin Liu, Min Li, Jianxin Wang, Wei Lan.Predicting microRNA-disease associations based on improved microRNA and disease similarities". IEEE/ACM Transactions on Computational Biology and Bioinformatics. DOI:10.1109/TCBB.2016.2586190
• [8]Yi Pan, Fangxiang Wu, Min Li, Huimin Luo, Juan Shang, Jianxin Wang, Junwei Luo.GapReduce: a gap filling algorithm based on partitioned read sets. IEEE/ACM Transactions on Computational Biology and Bioinformatics. DOI: 10.1109/TCBB.2018.2789909
• [9]Jianxin Wang, FangXiang Wu, Yu Tang, Dongyan Li, Min Li*.CytoCluster: a cytoscape plugin for cluster analysis and visualization of biological networks. Int. J. Mol. Sci. 2017, 18, 1880; doi:10.3390/ijms18091880
• [10]Yi Pan, Junwei Luo, Jianxin Wang, Yiming He, Zhongxiang Liao, Min Li*.ISEA: iterative seed-extension algorithm for de novo assembly using paired-end information and insert size distribution. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2017,14(4):916-925
• [11]Yi Pan, Fang-Xiang Wu, Jianxin Wang, Lingchen Zhao, Xiaodong Yan, Ping Huang, Min Li.VAliBS: a visual aligner for bisulfite sequences. BMC Bioinformatics 2017 18(Suppl 12):410
• [12]Jianxin Wang*, Yi Pan, Fang-Xiang Wu, XiaodongYan, Binbin Wu, Min Li.PECC: correcting contigs based on paired-end read distribution. Computational Biology and Chemistry, 2017, 69:178-184
• [13]Fangxiang Wu, Zhibei Niu, Yu Lu, Min Li.United complex centrality for identification of essential proteins from PPI networks. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2017, 14(2): 370-380
• [14]Lusheng Wang, Lu Chen, Min Li*, Wei Peng.Predicting protein functions by using unbalanced random walk algorithm on three biological networks. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2017, 14(2):360-369
• [15]Jianxin Wang*, Yi Pan, Fangxiang Wu, Jin Liu, Kaijie Zhao, Min Li, Wei Lan.LDAP: a web server for lncRNA-disease association prediction. Bioinformatics, 2017, 33(3): 458-460
• [16]Yi Pan, Fang-Xiang Wu, Min Li, Zhen Zhang, Jianxin Wang, Junwei Luo.BOSS: a novel scaffolding algorithm based on optimized scaffold graph. Bioinformatics, 2017， 33(2):169-176
• [17]Yi Pan., Jianxin Wang.Guest Editors Introduction to the Special Section on ISBRA 2014, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2017, 14(2): 314-315
• [18]Jianxin Wang*, Xiaogang Chen, Fangxiang Wu, Yi Pan, Min Li, Jin Liu.Classification of Schizophrenia Based on Individual Hierarchical Brain Networks Constructed From Structural MRI Images. IEEE Transactions on NanoBioscience, 2017, 16(7): 600-608
• [19]Jianxin Wang, Fang-Xiang Wu, Ruiqing Zheng, Wei Lan, Yi Pan, Min Li, Jin Liu.Complex Brain Network Analysis and Its Applications to Brain Disorders: A Survey. Complexity. Volume 2017, Article ID 8362741, 27 pages
• [20]Fang-Xiang Wu, Jianxin Wang, Min Li, Lingkai Tang, Lin Wu.Biomolecular Network Controllability With Drug Binding Information. IEEE Transactions on Nanobioscience. 2017, 16(5): 326-332